Publications

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2021

T. - H. Chen, Chatterjee, N., Landi, M. Teresa, and Shi, J., “A penalized regression framework for building polygenic risk models based on summary statistics from genome-wide association studies and incorporating external information.”, J Am Stat Assoc, vol. 116, no. 533, pp. 133-143, 2021.

2020

S. Nugent, Potvin, O., Cunnane, S. C., Chen, T. - H., and Duchesne, S., “Associating Type 2 Diabetes Risk Factor Genes and FDG-PET Brain Metabolism in Normal Aging and Alzheimer's Disease.”, Front Aging Neurosci, vol. 12, p. 580633, 2020.

T. - H. Chen and Boughal, H., “A penalized structural equation modeling method accounting for secondary phenotypes for variable selection on genetically regulated expression from PrediXcan for Alzheimer's disease.”, Biometrics, 2020.

J. R. Scarpa, Fatma, M., Loh, Y. - H. E., Traore, S. Romaric, Stefan, T., Chen, T. - H., Nestler, E. J., and Labonte, B., “Shared Transcriptional Signatures in Major Depressive Disorder and Mouse Chronic Stress Models.”, Biol Psychiatry, vol. 88, no. 2, pp. 159-168, 2020.

2019

N. Mavaddat, Michailidou, K., Dennis, J., Lush, M., Fachal, L., Lee, A., Tyrer, J. P., Chen, T. - H., Wang, Q., Bolla, M. K., Yang, X., Adank, M. A., Ahearn, T., Aittomäki, K., Allen, J., Andrulis, I. L., Anton-Culver, H., Antonenkova, N. N., Arndt, V., Aronson, K. J., Auer, P. L., Auvinen, P., Barrdahl, M., Freeman, L. E. Beane, Beckmann, M. W., Behrens, S., Benitez, J., Bermisheva, M., Bernstein, L., Blomqvist, C., Bogdanova, N. V., Bojesen, S. E., Bonanni, B., Børresen-Dale, A. - L., Brauch, H., Bremer, M., Brenner, H., Brentnall, A., Brock, I. W., Brooks-Wilson, A., Brucker, S. Y., Brüning, T., Burwinkel, B., Campa, D., Carter, B. D., Castelao, J. E., Chanock, S. J., Chlebowski, R., Christiansen, H., Clarke, C. L., J Collée, M., Cordina-Duverger, E., Cornelissen, S., Couch, F. J., Cox, A., Cross, S. S., Czene, K., Daly, M. B., Devilee, P., Dörk, T., Dos-Santos-Silva, I., Dumont, M., Durcan, L., Dwek, M., Eccles, D. M., Ekici, A. B., A Eliassen, H., Ellberg, C., Engel, C., Eriksson, M., D Evans, G., Fasching, P. A., Figueroa, J., Fletcher, O., Flyger, H., Försti, A., Fritschi, L., Gabrielson, M., Gago-Dominguez, M., Gapstur, S. M., García-Sáenz, J. A., Gaudet, M. M., Georgoulias, V., Giles, G. G., Gilyazova, I. R., Glendon, G., Goldberg, M. S., Goldgar, D. E., González-Neira, A., Alnæs, G. I. Grenaker, Grip, M., Gronwald, J., Grundy, A., Guénel, P., Haeberle, L., Hahnen, E., Haiman, C. A., Håkansson, N., Hamann, U., Hankinson, S. E., Harkness, E. F., Hart, S. N., He, W., Hein, A., Heyworth, J., Hillemanns, P., Hollestelle, A., Hooning, M. J., Hoover, R. N., Hopper, J. L., Howell, A., Huang, G., Humphreys, K., Hunter, D. J., Jakimovska, M., Jakubowska, A., Janni, W., John, E. M., Johnson, N., Jones, M. E., Jukkola-Vuorinen, A., Jung, A., Kaaks, R., Kaczmarek, K., Kataja, V., Keeman, R., Kerin, M. J., Khusnutdinova, E., Kiiski, J. I., Knight, J. A., Ko, Y. - D., Kosma, V. - M., Koutros, S., Kristensen, V. N., Krüger, U., Kühl, T., Lambrechts, D., Le Marchand, L., Lee, E., Lejbkowicz, F., Lilyquist, J., Lindblom, A., Lindström, S., Lissowska, J., Lo, W. - Y., Loibl, S., Long, J., Lubiński, J., Lux, M. P., MacInnis, R. J., Maishman, T., Makalic, E., Kostovska, I. Maleva, Mannermaa, A., Manoukian, S., Margolin, S., Martens, J. W. M., Martinez, M. Elena, Mavroudis, D., McLean, C., Meindl, A., Menon, U., Middha, P., Miller, N., Moreno, F., Mulligan, A. Marie, Mulot, C., Muñoz-Garzon, V. M., Neuhausen, S. L., Nevanlinna, H., Neven, P., Newman, W. G., Nielsen, S. F., Nordestgaard, B. G., Norman, A., Offit, K., Olson, J. E., Olsson, H., Orr, N., V Pankratz, S., Park-Simon, T. - W., Perez, J. I. A., Pérez-Barrios, C., Peterlongo, P., Peto, J., Pinchev, M., Plaseska-Karanfilska, D., Polley, E. C., Prentice, R., Presneau, N., Prokofyeva, D., Purrington, K., Pylkäs, K., Rack, B., Radice, P., Rau-Murthy, R., Rennert, G., Rennert, H. S., Rhenius, V., Robson, M., Romero, A., Ruddy, K. J., Ruebner, M., Saloustros, E., Sandler, D. P., Sawyer, E. J., Schmidt, D. F., Schmutzler, R. K., Schneeweiss, A., Schoemaker, M. J., Schumacher, F., Schürmann, P., Schwentner, L., Scott, C., Scott, R. J., Seynaeve, C., Shah, M., Sherman, M. E., Shrubsole, M. J., Shu, X. - O., Slager, S., Smeets, A., Sohn, C., Soucy, P., Southey, M. C., Spinelli, J. J., Stegmaier, C., Stone, J., Swerdlow, A. J., Tamimi, R. M., Tapper, W. J., Taylor, J. A., Terry, M. Beth, Thöne, K., Tollenaar, R. A. E. M., Tomlinson, I., Truong, T., Tzardi, M., Ulmer, H. - U., Untch, M., Vachon, C. M., van Veen, E. M., Vijai, J., Weinberg, C. R., Wendt, C., Whittemore, A. S., Wildiers, H., Willett, W., Winqvist, R., Wolk, A., Yang, X. R., Yannoukakos, D., Zhang, Y., Zheng, W., Ziogas, A., Dunning, A. M., Thompson, D. J., Chenevix-Trench, G., Chang-Claude, J., Schmidt, M. K., Hall, P., Milne, R. L., Pharoah, P. D. P., Antoniou, A. C., Chatterjee, N., Kraft, P., García-Closas, M., Simard, J., and Easton, D. F., “Polygenic Risk Scores for Prediction of Breast Cancer and Breast Cancer Subtypes.”, Am J Hum Genet, vol. 104, no. 1, pp. 21-34, 2019.

2018

F. Gu, Chen, T. - H., Pfeiffer, R. M., Fargnoli, M. Concetta, Calista, D., Ghiorzo, P., Peris, K., Puig, S., Menin, C., De Nicolo, A., Rodolfo, M., Pellegrini, C., Pastorino, L., Evangelou, E., Zhang, T., Hua, X., DellaValle, C. T., D Bishop, T., MacGregor, S., Iles, M. I., Law, M. H., Cust, A., Brown, K. M., Stratigos, A. J., Nagore, E., Chanock, S., Shi, J., Consortium, M. Meta- Analy, Consortium, M. N., and Landi, M. Teresa, “Combining common genetic variants and non-genetic risk factors to predict risk of cutaneous melanoma.”, Hum Mol Genet, vol. 27, no. 23, pp. 4145-4156, 2018.

2017

L. M. Morton, Sampson, J. N., Armstrong, G. T., Chen, T. - H., Hudson, M. M., Karlins, E., Dagnall, C. L., Li, S. Alfred, Wilson, C. L., Srivastava, D. Kumar, Liu, W., Kang, G., Oeffinger, K. C., Henderson, T. O., Moskowitz, C. S., Gibson, T. M., Merino, D. M., Wong, J. R., Hammond, S., Neglia, J. P., Turcotte, L. M., Miller, J., Bowen, L., Wheeler, W. A., Leisenring, W. M., Whitton, J. A., Burdette, L., Chung, C., Hicks, B. D., Jones, K., Machiela, M. J., Vogt, A., Wang, Z., Yeager, M., Neale, G., Lear, M., Strong, L. C., Yasui, Y., Stovall, M., Weathers, R. E., Smith, S. A., Howell, R., Davies, S. M., Radloff, G. A., Onel, K., de González, A. Berrington, Inskip, P. D., Rajaraman, P., Fraumeni, J. F., Bhatia, S., Chanock, S. J., Tucker, M. A., and Robison, L. L., “Genome-Wide Association Study to Identify Susceptibility Loci That Modify Radiation-Related Risk for Breast Cancer After Childhood Cancer.”, J Natl Cancer Inst, vol. 109, no. 11, 2017.

T. - H. Chen and Sun, W., “Prediction of cancer drug sensitivity using high-dimensional omic features.”, Biostatistics, vol. 18, no. 1, pp. 1-14, 2017.

2016

D. R. Roque, Makowski, L., Chen, T. - H., Rashid, N., D Hayes, N., and Bae-Jump, V., “Association between differential gene expression and body mass index among endometrial cancers from The Cancer Genome Atlas Project.”, Gynecol Oncol, vol. 142, no. 2, pp. 317-22, 2016.

W. Sun, Kechris, K., Jacobson, S., M Drummond, B., Hawkins, G. A., Yang, J., Chen, T. - H., Quibrera, P. Miguel, Anderson, W., R Barr, G., Basta, P. V., Bleecker, E. R., Beaty, T., Casaburi, R., Castaldi, P., Cho, M. H., Comellas, A., Crapo, J. D., Criner, G., Demeo, D., Christenson, S. A., Couper, D. J., Curtis, J. L., Doerschuk, C. M., Freeman, C. M., Gouskova, N. A., Han, M. L. K., Hanania, N. A., Hansel, N. N., Hersh, C. P., Hoffman, E. A., Kaner, R. J., Kanner, R. E., Kleerup, E. C., Lutz, S., Martinez, F. J., Meyers, D. A., Peters, S. P., Regan, E. A., Rennard, S. I., Scholand, M. Beth, Silverman, E. K., Woodruff, P. G., O'Neal, W. K., and Bowler, R. P., “Common Genetic Polymorphisms Influence Blood Biomarker Measurements in COPD.”, PLoS Genet, vol. 12, no. 8, p. e1006011, 2016.

T. - H. Chen, Sun, W., and Fine, J. P., “Designing penalty functions in high dimensional problems: The role of tuning parameters.”, Electron J Stat, vol. 10, no. 2, pp. 2312-2328, 2016.

T. - H. Chen, Sun, W., and Fine, J. P., “Designing penalty functions in high dimensional problems: The role of tuning parameters”, Electron. J. Statist., vol. 10, no. 2, p. - 23282312, 2016.

B. J. Arterberry, Chen, T. - H., Vergés, A., Bollen, K. A., and Martens, M. P., “How Should Alcohol Problems Be Conceptualized? Causal Indicators Within the Rutgers Alcohol Problem Index.”, Eval Health Prof, vol. 39, no. 3, pp. 356-78, 2016.

V. Sharma, Collins, L. B., Chen, T. - H., Herr, N., Takeda, S., Sun, W., Swenberg, J. A., and Nakamura, J., “Oxidative stress at low levels can induce clustered DNA lesions leading to NHEJ mediated mutations.”, Oncotarget, vol. 7, no. 18, pp. 25377-90, 2016.

2015

W. Sun, Liu, Y., Crowley, J. J., Chen, T. - H., Zhou, H., Chu, H., Huang, S., Kuan, P. - F., Li, Y., Miller, D. R., Shaw, G. D., Wu, Y., Zhabotynsky, V., McMillan, L., Zou, F., Sullivan, P. F., and de Villena, F. Pardo- Manu, “IsoDOT Detects Differential RNA-isoform Expression/Usage with respect to a Categorical or Continuous Covariate with High Sensitivity and Specificity.”, J Am Stat Assoc, vol. 110, no. 511, pp. 975-986, 2015.

2014

F. A. Wright, Sullivan, P. F., Brooks, A. I., Zou, F., Sun, W., Xia, K., Madar, V., Jansen, R., Chung, W., Zhou, Y. - H., Abdellaoui, A., Batista, S., Butler, C., Chen, G., Chen, T. - H., D'Ambrosio, D., Gallins, P., Ha, M. Jin, Hottenga, J. Jan, Huang, S., Kattenberg, M., Kochar, J., Middeldorp, C. M., Qu, A., Shabalin, A., Tischfield, J., Todd, L., Tzeng, J. - Y., van Grootheest, G., Vink, J. M., Wang, Q., Wang, W., Wang, W., Willemsen, G., Smit, J. H., de Geus, E. J., Yin, Z., Penninx, B. W. J. H., and Boomsma, D. I., “Heritability and genomics of gene expression in peripheral blood.”, Nat Genet, vol. 46, no. 5, pp. 430-7, 2014.

Publications

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